STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM61426.1L-lysine 6-transaminase precursor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (445 aa)    
Predicted Functional Partners:
SHM27245.1
Threonine dehydratase.
   
 
 0.927
SHM27986.1
enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase.
   
 0.925
SHM88332.1
Propionaldehyde dehydrogenase.
  
 0.781
SHM25727.1
Carbon-nitrogen hydrolase.
  
 
 0.726
SHM29825.1
Sarcosine oxidase subunit beta.
  
 
 0.705
SHM64587.1
Aspartate kinase; Belongs to the aspartokinase family.
    
 0.664
SHM30213.1
Putative glutamine amidotransferase.
  
 
 0.634
SHM82035.1
Hypothetical protein.
  
 
 0.615
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
  
  
 0.608
SHM16683.1
L-glutamine synthetase.
  
 
 0.603
Your Current Organism:
Caldanaerovirga acetigignens
NCBI taxonomy Id: 447595
Other names: C. acetigignens, Caldanaerovirga acetigignens Wagner et al. 2009, DSM 18802, strain JW/SA-NV4
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