STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
galM2Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. (415 aa)    
Predicted Functional Partners:
galK
Galactokinase; High confidence in function and specificity; Belongs to the GHMP kinase family. GalK subfamily.
 0.988
galE1
UDP-glucose 4-epimerase; High confidence in function and specificity; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
  
 0.928
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 
 0.921
hxk
Hxk protein; High confidence in function and specificity.
  
  
 0.921
glk
Glk protein; High confidence in function and specificity; Belongs to the bacterial glucokinase family.
    
 0.916
galM1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
  
 
0.916
ppgK
Polyphosphate-glucose phosphotransferase; High confidence in function and specificity.
    
 0.913
sce7608
Glyco_hydro_35 domain-containing protein; Unnamed protein product; High confidence in function and specificity; Belongs to the glycosyl hydrolase 35 family.
  
 
 0.908
xylA
Xylose isomerase; High confidence in function and specificity; Belongs to the xylose isomerase family.
 
  
 0.574
sce0967
Hypothetical protein.
 
     0.556
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.