STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1588Cytochrome P450 CYP260A1; Family membership; Belongs to the cytochrome P450 family. (394 aa)    
Predicted Functional Partners:
sce2387
Non-ribosomal peptide synthetase; Family membership.
  
 0.983
sce0345
NRPS/PKS hybrid; Family membership.
  
 
 0.976
sce8262
Non-ribosomal peptide synthetase; Family membership.
  
 0.953
sce6823
NRPS/PKS hybrid.
  
 
 0.942
sce3190
Polyketide synthase; Family membership.
  
 0.910
sce8255
Non-ribosomal peptide synthetase; Family membership.
  
 
 0.874
sce8256
Non-ribosomal peptide synthetase; Family membership.
  
 0.807
polA1
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.703
topB
DNA topoisomerase III; High confidence in function and specificity.
    
 0.643
sce6630
Putative cytochrome P450.
  
     0.640
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.