STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (501 aa)    
Predicted Functional Partners:
araB
Ribulokinase; High confidence in function and specificity.
 
 0.999
araD
L-ribulose-phosphate 4-epimerase; High confidence in function and specificity.
 
 0.995
sce3304
Put. Xylosidase/arabinosidase.
 
  
 0.886
xynD
Endo-1,4-beta-xylanase; High confidence in function and specificity; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.864
sce1955
Hypothetical protein predicted by Glimmer/Critica; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.861
sce3118
Hypothetical protein; Putative xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.861
xynB4
Xylan 1,4-beta-xylosidase; High confidence in function and specificity; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.845
yagH
Beta-xylosidase (14-beta-D-xylan xylohydrolase) (Xylan 14-beta-xylosidase); High confidence in function and specificity; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.839
sce1246
Putative Alpha-arabinofuranosidase; Family membership.
 
  
 0.801
mtnB
put.Sugar aldolase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Belongs to the aldolase class II family. MtnB subfamily.
  
  
 0.654
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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