STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce5849Putative outer membrane protein; Family membership. (274 aa)    
Predicted Functional Partners:
sce5128
Putative outer membrane protein.
  
 
 
 0.793
sce1706
Outer membrane protein.
  
 
 
 0.792
sce6431
Putative outer membrane protein.
  
 
 
 0.792
sce0648
ompA-family exported protein; Family membership.
  
     0.633
sce5850
Conserved hypothetical protein/ATP-utilizing enzymes of the PP-loop superfamily; Family membership.
       0.545
tolQ2
TolQ protein; Specificity unclear.
 
   
 0.526
tolQ3
tolQ protein; High confidence in function and specificity.
 
   
 0.497
sce7969
Hypothetical protein; Family membership.
  
 
 0.443
tolQ1
Putative transport transmembrane protein, tolQ; High confidence in function and specificity.
 
   
 0.431
tolB
tolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.403
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.