Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cafA | rph | sce7264 | sce7975 | Ribonuclease G; Family membership. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.515 |
| cafA | sce7653 | sce7264 | sce7653 | Ribonuclease G; Family membership. | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides. | 0.547 |
| czcD | sce7652 | sce7651 | sce7652 | Cation efflux family protein; High confidence in function and specificity. | Acetyl-CoA acyltransferase; Family membership; Belongs to the thiolase-like superfamily. Thiolase family. | 0.736 |
| czcD | sce7653 | sce7651 | sce7653 | Cation efflux family protein; High confidence in function and specificity. | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides. | 0.607 |
| gst2 | sce6268 | sce0602 | sce6268 | Gst2 protein; Glutathione S-transferase. | Hypothetical protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. | 0.423 |
| gst2 | sce7653 | sce0602 | sce7653 | Gst2 protein; Glutathione S-transferase. | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides. | 0.521 |
| hrpA | purL | sce6384 | sce0240 | ATP-dependent helicase HrpA; Family membership. | Phosphoribosylformylglycinamidine synthase,probable; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.550 |
| hrpA | rph | sce6384 | sce7975 | ATP-dependent helicase HrpA; Family membership. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.764 |
| hrpA | sce7653 | sce6384 | sce7653 | ATP-dependent helicase HrpA; Family membership. | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides. | 0.562 |
| pepP | sce7653 | sce8667 | sce7653 | PepP protein; Family membership. | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides. | 0.470 |
| purL | hrpA | sce0240 | sce6384 | Phosphoribosylformylglycinamidine synthase,probable; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | ATP-dependent helicase HrpA; Family membership. | 0.550 |
| purL | sce6268 | sce0240 | sce6268 | Phosphoribosylformylglycinamidine synthase,probable; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | Hypothetical protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. | 0.464 |
| purL | sce7653 | sce0240 | sce7653 | Phosphoribosylformylglycinamidine synthase,probable; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides. | 0.643 |
| rph | cafA | sce7975 | sce7264 | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | Ribonuclease G; Family membership. | 0.515 |
| rph | hrpA | sce7975 | sce6384 | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | ATP-dependent helicase HrpA; Family membership. | 0.764 |
| rph | sce7653 | sce7975 | sce7653 | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides. | 0.483 |
| sce6268 | gst2 | sce6268 | sce0602 | Hypothetical protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. | Gst2 protein; Glutathione S-transferase. | 0.423 |
| sce6268 | purL | sce6268 | sce0240 | Hypothetical protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. | Phosphoribosylformylglycinamidine synthase,probable; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.464 |
| sce6268 | sce7653 | sce6268 | sce7653 | Hypothetical protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides. | 0.586 |
| sce7652 | czcD | sce7652 | sce7651 | Acetyl-CoA acyltransferase; Family membership; Belongs to the thiolase-like superfamily. Thiolase family. | Cation efflux family protein; High confidence in function and specificity. | 0.736 |
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