STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gabT24-aminobutyrate transaminase; Family membership; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (452 aa)    
Predicted Functional Partners:
sce9190
Putative 4-aminobutyrate transaminase; Family membership; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 
0.928
sce9194
4-aminobutyrate transaminase; Family membership; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 
0.921
sce5007
Putative Aldehyde dehydrogenase (NAD(+)); Family membership; Belongs to the aldehyde dehydrogenase family.
 
 0.919
sce5973
Succinate-semialdehyde dehydrogenase (NAD(P)(+)); High confidence in function and specificity.
 
 0.919
mmsA
Methylmalonate-semialdehyde dehydrogenase.
 
 0.919
sce9189
Aldehyde dehydrogenase (NAD(+)); Family membership; Belongs to the aldehyde dehydrogenase family.
 
 0.919
sce3848
Beta-alanine synthetase.
  
 
 0.915
sce6400
CN hydrolase domain-containing protein; Unnamed protein product; Specificity unclear.
  
 
 0.915
sce0048
enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase; Family membership; Belongs to the enoyl-CoA hydratase/isomerase family.
    
 0.912
panD
Aspartate 1-decarboxylase alpha chain; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
     
 0.911
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.