Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
sce2169 | sce2387 | Hypothetical protein; NADPH:quinone reductase and related Zn-dependent oxidoreductases. | Non-ribosomal peptide synthetase; Family membership. | 0.460 |
sce2169 | sce3192 | Hypothetical protein; NADPH:quinone reductase and related Zn-dependent oxidoreductases. | Polyketide synthase; Family membership. | 0.406 |
sce2169 | sce6823 | Hypothetical protein; NADPH:quinone reductase and related Zn-dependent oxidoreductases. | NRPS/PKS hybrid. | 0.507 |
sce2169 | sce9319 | Hypothetical protein; NADPH:quinone reductase and related Zn-dependent oxidoreductases. | Alcohol dehydrogenase; Family membership. | 0.745 |
sce2387 | sce2169 | Non-ribosomal peptide synthetase; Family membership. | Hypothetical protein; NADPH:quinone reductase and related Zn-dependent oxidoreductases. | 0.460 |
sce2387 | sce3192 | Non-ribosomal peptide synthetase; Family membership. | Polyketide synthase; Family membership. | 0.999 |
sce2387 | sce5006 | Non-ribosomal peptide synthetase; Family membership. | Putative Aldehyde dehydrogenase (NAD(+)); Family membership. | 0.408 |
sce2387 | sce6823 | Non-ribosomal peptide synthetase; Family membership. | NRPS/PKS hybrid. | 0.998 |
sce2387 | sce9189 | Non-ribosomal peptide synthetase; Family membership. | Aldehyde dehydrogenase (NAD(+)); Family membership; Belongs to the aldehyde dehydrogenase family. | 0.408 |
sce2387 | sce9319 | Non-ribosomal peptide synthetase; Family membership. | Alcohol dehydrogenase; Family membership. | 0.460 |
sce3192 | sce2169 | Polyketide synthase; Family membership. | Hypothetical protein; NADPH:quinone reductase and related Zn-dependent oxidoreductases. | 0.406 |
sce3192 | sce2387 | Polyketide synthase; Family membership. | Non-ribosomal peptide synthetase; Family membership. | 0.999 |
sce3192 | sce6823 | Polyketide synthase; Family membership. | NRPS/PKS hybrid. | 0.998 |
sce3192 | sce9319 | Polyketide synthase; Family membership. | Alcohol dehydrogenase; Family membership. | 0.406 |
sce5006 | sce2387 | Putative Aldehyde dehydrogenase (NAD(+)); Family membership. | Non-ribosomal peptide synthetase; Family membership. | 0.408 |
sce5006 | sce9319 | Putative Aldehyde dehydrogenase (NAD(+)); Family membership. | Alcohol dehydrogenase; Family membership. | 0.527 |
sce6823 | sce2169 | NRPS/PKS hybrid. | Hypothetical protein; NADPH:quinone reductase and related Zn-dependent oxidoreductases. | 0.507 |
sce6823 | sce2387 | NRPS/PKS hybrid. | Non-ribosomal peptide synthetase; Family membership. | 0.998 |
sce6823 | sce3192 | NRPS/PKS hybrid. | Polyketide synthase; Family membership. | 0.998 |
sce6823 | sce9319 | NRPS/PKS hybrid. | Alcohol dehydrogenase; Family membership. | 0.507 |
page 1 of 2