STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_07492Transcription initiation factor IIA subunit 1. (222 aa)    
Predicted Functional Partners:
BWQ96_01762
Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.
    
 0.998
BWQ96_05346
TATA-box-binding protein.
   
 0.995
BWQ96_01760
General transcription factor IIF subunit 2.
   
 0.969
BWQ96_06497
Transcription initiation factor IIE subunit alpha.
    
 0.968
BWQ96_00805
General transcription factor IIE subunit 2.
    
 0.968
BWQ96_04871
General transcription factor IIH subunit.
    
 0.965
BWQ96_05568
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.963
BWQ96_05007
TFIIH basal transcription factor complex helicase repB subunit.
    
 0.957
BWQ96_10195
DNA-directed RNA polymerases II, IV and V subunit 3.
   
  0.953
BWQ96_06446
CDK-activating kinase assembly factor MAT1.
    
 0.952
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.