STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_02068DExH-box ATP-dependent RNA helicase DExH14. (1293 aa)    
Predicted Functional Partners:
BWQ96_00760
PRP1_N domain-containing protein.
   
 0.887
BWQ96_09763
Pre-mRNA-processing-splicing factor 8.
   
 0.875
BWQ96_00287
Pre-mRNA-processing-splicing factor 8.
   
 0.875
BWQ96_08112
Thioredoxin-like protein 4A.
    
 0.862
BWQ96_03195
Small nuclear ribonucleoprotein F.
   
 0.853
BWQ96_03318
Small nuclear ribonucleoprotein Sm D3.
   
 0.848
BWQ96_07327
Small nuclear ribonucleoprotein Sm D2.
   
 0.842
BWQ96_03634
Small nuclear ribonucleoprotein G.
   
  0.841
BWQ96_03558
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 0.837
BWQ96_00334
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.837
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.