STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWQ96_00628General transcription factor 3C polypeptide 3. (863 aa)    
Predicted Functional Partners:
BWQ96_08561
General transcription factor 3C polypeptide 5.
   
 0.997
BWQ96_03557
Transcription factor IIIB 90 kDa subunit.
    
 0.994
BWQ96_06016
Cleavage and polyadenylation specificity factor subunit 2.
    
   0.974
BWQ96_04391
Cleavage and polyadenylation specificity factor subunit 1.
    
   0.973
BWQ96_09514
Protein CLP1-like.
    
 
 0.965
BWQ96_01689
Cleavage and polyadenylation specificity factor subunit 3-I.
   
   0.965
BWQ96_03278
Symplekin.
   
   0.964
BWQ96_08750
Transcription factor TFIIIB component B.
   
 0.945
BWQ96_09012
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.830
BWQ96_05346
TATA-box-binding protein.
    
 0.818
Your Current Organism:
Gracilariopsis chorda
NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.