C2G38_1996121 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_1996121

Kinase-like domain-containing protein. (678 aa)

Predicted Functional Partners:

C2G38_2087926

0.733

C2G38_587461

0.726

C2G38_2206546

0.726

C2G38_2206545

0.726

C2G38_113557

0.726

C2G38_2074506

0.696

C2G38_2107837

0.680

C2G38_2229806

0.675

C2G38_2189219

0.675

C2G38_2242857

0.675

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_113557	C2G38_1996121	A0A397VYI3	A0A397W2T6	Kinase-like domain-containing protein.	Kinase-like domain-containing protein.	0.726
C2G38_113557	C2G38_2074506	A0A397VYI3	A0A397VK24	Kinase-like domain-containing protein.	Kinase-like domain-containing protein.	0.991
C2G38_113557	C2G38_2087926	A0A397VYI3	A0A397V4X7	Kinase-like domain-containing protein.	Uncharacterized protein.	0.941
C2G38_113557	C2G38_2189219	A0A397VYI3	A0A397V4Z5	Kinase-like domain-containing protein.	Kinase-like domain-containing protein.	0.983
C2G38_113557	C2G38_2206545	A0A397VYI3	A0A397UNB9	Kinase-like domain-containing protein.	Protein kinase domain-containing protein.	0.979
C2G38_113557	C2G38_2206546	A0A397VYI3	A0A397UJ80	Kinase-like domain-containing protein.	Kinase-like domain-containing protein.	0.793
C2G38_113557	C2G38_2229806	A0A397VYI3	A0A397TVA3	Kinase-like domain-containing protein.	Protein kinase domain-containing protein.	0.983
C2G38_113557	C2G38_2242857	A0A397VYI3	A0A397VL56	Kinase-like domain-containing protein.	Protein kinase domain-containing protein.	0.983
C2G38_113557	C2G38_587461	A0A397VYI3	A0A397U5Q1	Kinase-like domain-containing protein.	Pkinase_Tyr domain-containing protein.	0.979
C2G38_1996121	C2G38_113557	A0A397W2T6	A0A397VYI3	Kinase-like domain-containing protein.	Kinase-like domain-containing protein.	0.726
C2G38_1996121	C2G38_2074506	A0A397W2T6	A0A397VK24	Kinase-like domain-containing protein.	Kinase-like domain-containing protein.	0.696
C2G38_1996121	C2G38_2087926	A0A397W2T6	A0A397V4X7	Kinase-like domain-containing protein.	Uncharacterized protein.	0.733
C2G38_1996121	C2G38_2107837	A0A397W2T6	A0A397UHE6	Kinase-like domain-containing protein.	Uncharacterized protein.	0.680
C2G38_1996121	C2G38_2189219	A0A397W2T6	A0A397V4Z5	Kinase-like domain-containing protein.	Kinase-like domain-containing protein.	0.675
C2G38_1996121	C2G38_2206545	A0A397W2T6	A0A397UNB9	Kinase-like domain-containing protein.	Protein kinase domain-containing protein.	0.726
C2G38_1996121	C2G38_2206546	A0A397W2T6	A0A397UJ80	Kinase-like domain-containing protein.	Kinase-like domain-containing protein.	0.726
C2G38_1996121	C2G38_2229806	A0A397W2T6	A0A397TVA3	Kinase-like domain-containing protein.	Protein kinase domain-containing protein.	0.675
C2G38_1996121	C2G38_2242857	A0A397W2T6	A0A397VL56	Kinase-like domain-containing protein.	Protein kinase domain-containing protein.	0.675
C2G38_1996121	C2G38_587461	A0A397W2T6	A0A397U5Q1	Kinase-like domain-containing protein.	Pkinase_Tyr domain-containing protein.	0.726
C2G38_2074506	C2G38_113557	A0A397VK24	A0A397VYI3	Kinase-like domain-containing protein.	Kinase-like domain-containing protein.	0.991