STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shcSqualene-hopene-cyclase. (635 aa)    
Predicted Functional Partners:
MAE_33550
Squalene/phytoene synthase.
 
 
 0.986
MAE_56760
Radical S-adenosylmethionine superfamily protein; Radical SAM.
   
 0.937
MAE_31240
Glycosyl transferase family 2.
 
     0.786
MAE_12450
Hypothetical protein.
 
   
 0.759
MAE_31760
Hypothetical protein.
 
     0.733
MAE_28690
Bacterioferritin.
  
   
 0.623
MAE_29450
Hypothetical protein; Similar to sterol C5-desaturase.
   
 
 0.599
MAE_38890
Hypothetical protein.
   
 
 0.599
cpcF
Phycocyanin alpha-subunit phycocyanobilin lyase.
      
 0.570
cpcE
Phycocyanin alpha-subunit phycocyanobilin lyase.
      
 0.570
Your Current Organism:
Microcystis aeruginosa
NCBI taxonomy Id: 449447
Other names: M. aeruginosa NIES-843, Microcystis aeruginosa NIES-843
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.