STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgee_2178Tyrosine-specific transport protein. (393 aa)    
Predicted Functional Partners:
Lgee_2180
Outer membrane protein, OmpA family protein.
       0.653
Lgee_2179
Tyrosine-specific transport protein.
 
    
0.645
Lgee_1011
Protein IcmO (DotL).
  
     0.591
Lgee_1259
IcmT protein.
  
     0.580
enhA_2
Enhanced entry protein EnhA.
  
     0.555
Lgee_2247
Amino acid antiporter.
  
 
   0.554
Lgee_0460
HTH-type transcriptional regulator.
  
     0.542
dotC
Defect in organelle trafficking lipoprotein DotC.
  
     0.517
Lgee_1845
Protein IcmL (DotI).
  
     0.510
Lgee_0302
Amino acid antiporter.
  
 
   0.503
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.