STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHZ_c0077Pterin-4-alpha-carbinolamine dehydratase. (97 aa)    
Predicted Functional Partners:
phhA
Phenylalanine-4-hydroxylase.
 
 0.990
PHZ_c0076
Hydrolase, haloacid dehalogenase-like family.
       0.778
PHZ_c0078
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase.
  
  
 0.756
hpd
4-hydroxyphenylpyruvate dioxygenase.
  
  
 0.740
hmgA
Homogentisate 1,2-dioxygenase.
  
  
 0.679
PHZ_c0075
Conserved hypothetical protein.
       0.563
PHZ_c2876
tRNA nucleotidyltransferase/poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
      0.559
PHZ_c2567
Conserved hypothetical protein.
  
  
 0.461
Your Current Organism:
Phenylobacterium zucineum
NCBI taxonomy Id: 450851
Other names: P. zucineum HLK1, Phenylobacterium zucineum HLK1, Phenylobacterium zucineum str. HLK1, Phenylobacterium zucineum strain HLK1
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