STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHZ_c20004-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (428 aa)    
Predicted Functional Partners:
gabD
Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.983
PHZ_c1995
Methylmalonate-semialdehyde dehydrogenase.
 
 0.979
mmsA1
Methylmalonate-semialdehyde dehydrogenase.
 
 0.930
PHZ_c1634
Succinate-semialdehyde dehydrogenase.
 
 0.929
PHZ_c2117
NAD-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.929
PHZ_c2846
Aldehyde dehydrogenase.
 
 0.929
PHZ_c3046
NAD-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.929
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
     
 0.912
panC
Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
     
 0.903
PHZ_c1678
3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
     
  0.900
Your Current Organism:
Phenylobacterium zucineum
NCBI taxonomy Id: 450851
Other names: P. zucineum HLK1, Phenylobacterium zucineum HLK1, Phenylobacterium zucineum str. HLK1, Phenylobacterium zucineum strain HLK1
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