STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHZ_c2980Conserved hypothetical protein. (210 aa)    
Predicted Functional Partners:
PHZ_c2945
Conserved hypothetical protein.
  
   
 0.778
PHZ_c3205
Conserved hypothetical protein.
  
     0.705
PHZ_c0786
Conserved hypothetical protein.
  
     0.682
PHZ_c0296
Conserved hypothetical protein.
 
     0.657
PHZ_c2167
Conserved hypothetical protein.
  
     0.585
PHZ_c0517
Conserved hypothetical protein.
  
     0.551
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
       0.534
PHZ_c2695
Sensor histidine kinase.
  
     0.524
PHZ_c0357
Prepilin peptidase CpaA; Belongs to the peptidase A24 family.
  
     0.522
PHZ_c3143
Hydrolase, alpha/beta hydrolase fold family protein.
  
     0.493
Your Current Organism:
Phenylobacterium zucineum
NCBI taxonomy Id: 450851
Other names: P. zucineum HLK1, Phenylobacterium zucineum HLK1, Phenylobacterium zucineum str. HLK1, Phenylobacterium zucineum strain HLK1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.