STRINGSTRING
MLOC_13939.12 protein (Hordeum vulgare) - STRING interaction network
"MLOC_13939.12" - Pseudouridine synthase in Hordeum vulgare
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MLOC_13939.12Pseudouridine synthase (248 aa)    
Predicted Functional Partners:
MLOC_34318.1
Predicted protein (510 aa)
   
   
  0.602
MLOC_6793.2
Predicted protein (482 aa)
   
   
  0.552
MLOC_14891.1
Predicted protein (477 aa)
   
   
  0.552
MLOC_63593.1
Uncharacterized protein (195 aa)
   
 
  0.551
MLOC_57813.1
Uncharacterized protein (183 aa)
   
 
  0.551
MLOC_56470.1
Predicted protein (195 aa)
   
 
  0.551
MLOC_74131.1
Predicted protein (892 aa)
   
   
  0.539
MLOC_58704.1
Predicted protein (286 aa)
   
  0.533
MLOC_47794.11
Predicted protein (257 aa)
   
  0.533
MLOC_25162.1
Uncharacterized protein (257 aa)
   
   
  0.517
Your Current Organism:
Hordeum vulgare
NCBI taxonomy Id: 4513
Other names: H. vulgare, Hordeum, Hordeum L., Hordeum vulgare, Hordeum vulgare L., Triticeae, barley, barleys
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