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rpoC1 protein (Hordeum vulgare) - STRING interaction network
"rpoC1" - DNA-directed RNA polymerase subunit in Hordeum vulgare
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoC1DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (545 aa)    
Predicted Functional Partners:
rpoC2
Uncharacterized protein; DNA-directed RNA polymerase subunit beta’’ (205 aa)
 
 
  0.995
AGP50747
DNA-directed RNA polymerase subunit beta’’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; Belongs to the RNA polymerase beta’ chain family. RpoC2 subfamily (1477 aa)
 
 
  0.978
MLOC_24891.1
Uncharacterized protein (141 aa)
   
 
  0.949
AGP50756
Photosystem I assembly protein Ycf3; Essential for the assembly of the photosystem I (PSI) complex. May act as a chaperone-like factor to guide the assembly of the PSI subunits (172 aa)
     
  0.926
4525093
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1076 aa)
  0.909
atpF
ATP synthase subunit b, chloroplastic; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) (188 aa)
   
   
  0.902
clpP
ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins; Belongs to the peptidase S14 family (216 aa)
     
   
  0.900
rpoB
Uncharacterized protein; DNA-directed RNA polymerase subunit beta ; Belongs to the RNA polymerase beta chain family (347 aa)
  0.886
matK
Maturase K; Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns (314 aa)
     
   
  0.883
AGP50736
Maturase K; Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns (511 aa)
     
   
  0.883
Your Current Organism:
Hordeum vulgare
NCBI taxonomy Id: 4513
Other names: H. vulgare, Hordeum vulgare, Hordeum vulgare L., barley
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