STRINGSTRING
ccsA protein (Hordeum vulgare) - STRING interaction network
"ccsA" - Uncharacterized protein in Hordeum vulgare
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccsAUncharacterized protein (188 aa)    
Predicted Functional Partners:
MLOC_21099.1
Predicted protein (178 aa)
     
  0.923
MLOC_70900.1
Predicted protein (224 aa)
     
  0.898
MLOC_62487.1
Uncharacterized protein (1117 aa)
       
  0.707
MLOC_71195.2
Uncharacterized protein (431 aa)
 
     
  0.687
psaB
Uncharacterized protein (41 aa)
   
   
  0.676
MLOC_60339.1
Uncharacterized protein (194 aa)
   
   
  0.665
rpoC1
DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (545 aa)
   
   
  0.665
petA
Uncharacterized protein (320 aa)
     
   
  0.623
rpoC2
Plastid-encoded RNA polymerase subunit beta’’ ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (205 aa)
   
   
  0.618
matK
Maturase K ; Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns (314 aa)
     
   
  0.602
Your Current Organism:
Hordeum vulgare
NCBI taxonomy Id: 4513
Other names: H. vulgare, Hordeum, Hordeum L., Hordeum vulgare, Hordeum vulgare L., Triticeae, barley, barleys
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