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STRINGSTRING
MLOC_38610.1 protein (Hordeum vulgare) - STRING interaction network
"MLOC_38610.1" - Histone deacetylase in Hordeum vulgare
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MLOC_38610.1Histone deacetylase (198 aa)    
Predicted Functional Partners:
MLOC_61284.1
Uncharacterized protein (79 aa)
           
  0.960
MLOC_17056.1
Histone deacetylase ; Belongs to the histone deacetylase family. HD Type 1 subfamily (458 aa)
   
  0.944
MLOC_60936.4
Uncharacterized protein (499 aa)
   
  0.939
MLOC_6441.1
Uncharacterized protein (264 aa)
   
  0.920
MLOC_71091.1
Histone deacetylase ; Belongs to the histone deacetylase family. HD Type 1 subfamily (386 aa)
   
  0.907
MLOC_10109.1
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily (373 aa)
   
  0.906
MLOC_44613.3
Uncharacterized protein (237 aa)
       
  0.891
MLOC_12524.2
Uncharacterized protein (509 aa)
       
  0.891
MLOC_25906.3
Uncharacterized protein (340 aa)
     
  0.882
MLOC_73273.1
Predicted protein (87 aa)
   
  0.870
Your Current Organism:
Hordeum vulgare
NCBI taxonomy Id: 4513
Other names: H. vulgare, Hordeum vulgare, Hordeum vulgare L., barley
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