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STRINGSTRING
MLOC_39888.4 protein (Hordeum vulgare) - STRING interaction network
"MLOC_39888.4" - Uncharacterized protein in Hordeum vulgare
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MLOC_39888.4Uncharacterized protein (177 aa)    
Predicted Functional Partners:
GATC
Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho- Glu-tRNA(Gln); Belongs to the GatC family (145 aa)
     
  0.967
MLOC_12286.2
Uncharacterized protein (433 aa)
     
  0.967
MLOC_55368.3
Uncharacterized protein (817 aa)
     
  0.967
MLOC_54742.1
Uncharacterized protein (122 aa)
     
  0.967
MLOC_74269.1
Predicted protein; Belongs to the WD repeat SEC13 family (305 aa)
     
  0.964
MLOC_7094.1
Predicted protein; Belongs to the WD repeat SEC13 family (166 aa)
     
  0.964
MLOC_12549.2
Nuclear pore protein (868 aa)
     
  0.936
MLOC_67386.4
Uncharacterized protein (223 aa)
     
  0.930
MLOC_3970.1
Uncharacterized protein (1308 aa)
     
  0.922
MLOC_68641.2
Uncharacterized protein (713 aa)
     
  0.916
Your Current Organism:
Hordeum vulgare
NCBI taxonomy Id: 4513
Other names: H. vulgare, Hordeum vulgare, Hordeum vulgare L., barley
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