STRINGSTRING
MLOC_4725.4 protein (Hordeum vulgare) - STRING interaction network
"MLOC_4725.4" - RNA polymerase sigma factor in Hordeum vulgare
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MLOC_4725.4RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released (553 aa)    
Predicted Functional Partners:
MLOC_22512.2
Uncharacterized protein (287 aa)
     
        0.884
MLOC_58855.1
Predicted protein; Uncharacterized protein (133 aa)
     
        0.865
MLOC_58999.1
Phosphoribulokinase (404 aa)
   
   
  0.861
MLOC_57289.1
Uncharacterized protein (170 aa)
     
        0.790
MLOC_67112.1
Predicted protein (142 aa)
   
 
  0.789
MLOC_78630.1
Predicted protein (328 aa)
     
        0.757
MLOC_65066.3
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated (286 aa)
     
        0.757
MLOC_18320.1
Uncharacterized protein (237 aa)
 
 
   
  0.750
MLOC_71397.1
Uncharacterized protein (192 aa)
     
        0.724
rpoA
Uncharacterized protein; DNA-directed RNA polymerase subunit alpha (233 aa)
   
 
  0.715
Your Current Organism:
Hordeum vulgare
NCBI taxonomy Id: 4513
Other names: H. vulgare, Hordeum vulgare, Hordeum vulgare L., barley
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