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STRINGSTRING
MLOC_50278.3 protein (Hordeum vulgare) - STRING interaction network
"MLOC_50278.3" - RING-type E3 ubiquitin transferase in Hordeum vulgare
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MLOC_50278.3RING-type E3 ubiquitin transferase (493 aa)    
Predicted Functional Partners:
MLOC_72928.1
Uncharacterized protein (479 aa)
     
   
  0.838
fch2
Chlorophyllide a oxygenase; Uncharacterized protein (550 aa)
           
  0.746
MLOC_5176.2
Uncharacterized protein (931 aa)
       
 
  0.702
MLOC_69140.1
Uncharacterized protein; S-adenosylmethionine decarboxylase proenzyme (393 aa)
           
  0.695
MLOC_43485.1
Predicted protein (360 aa)
           
  0.694
MLOC_18056.1
Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family (75 aa)
           
  0.692
MLOC_46309.1
Uncharacterized protein (177 aa)
       
 
  0.646
MLOC_74684.1
Uncharacterized protein (419 aa)
       
      0.526
MLOC_62478.1
S-adenosylmethionine decarboxylase proenzyme (389 aa)
           
  0.407
MLOC_69328.1
Uncharacterized protein; Belongs to the protein kinase superfamily (417 aa)
     
 
  0.401
Your Current Organism:
Hordeum vulgare
NCBI taxonomy Id: 4513
Other names: H. vulgare, Hordeum vulgare, Hordeum vulgare L., barley
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