STRINGSTRING
MLOC_5090.1 protein (Hordeum vulgare) - STRING interaction network
"MLOC_5090.1" - Uncharacterized protein in Hordeum vulgare
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MLOC_5090.1Uncharacterized protein (627 aa)    
Predicted Functional Partners:
MLOC_52360.1
Uncharacterized protein (240 aa)
     
 
  0.918
MLOC_61052.6
Uncharacterized protein; Belongs to the RNA polymerase beta chain family (823 aa)
     
        0.865
MLOC_15664.1
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (670 aa)
     
        0.850
MLOC_68236.1
Predicted protein (321 aa)
     
        0.838
MLOC_6092.2
Uncharacterized protein (318 aa)
     
        0.838
MLOC_10889.1
Elongator complex protein 3; Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation (378 aa)
   
   
  0.837
MLOC_19714.1
Uncharacterized protein (1141 aa)
     
 
  0.815
MLOC_80715.2
Uncharacterized protein (1594 aa)
     
   
  0.798
MLOC_61417.2
Uncharacterized protein (721 aa)
     
        0.753
CTU1
Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position (359 aa)
   
   
  0.745
Your Current Organism:
Hordeum vulgare
NCBI taxonomy Id: 4513
Other names: H. vulgare, Hordeum vulgare, Hordeum vulgare L., barley
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