• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
MLOC_53883.5 protein (Hordeum vulgare) - STRING interaction network
"MLOC_53883.5" - DNA topoisomerase in Hordeum vulgare
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MLOC_53883.5DNA topoisomerase (918 aa)    
Predicted Functional Partners:
MLOC_17646.3
DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (734 aa)
     
 
0.976
MLOC_54481.2
Uncharacterized protein (450 aa)
     
  0.971
MLOC_64534.1
Uncharacterized protein (998 aa)
   
  0.964
MLOC_82021.4
Uncharacterized protein (343 aa)
   
  0.954
MLOC_4523.2
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily (1035 aa)
     
  0.935
MLOC_50110.1
Uncharacterized protein (353 aa)
   
  0.921
MLOC_25539.1
Uncharacterized protein (152 aa)
   
  0.921
MLOC_69650.8
Uncharacterized protein (520 aa)
     
  0.905
MLOC_13987.1
Uncharacterized protein (829 aa)
     
  0.905
MLOC_65408.1
Uncharacterized protein (323 aa)
   
  0.881
Your Current Organism:
Hordeum vulgare
NCBI taxonomy Id: 4513
Other names: H. vulgare, Hordeum vulgare, Hordeum vulgare L., barley
Server load: low (11%) [HD]