STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAP_02870Uncharacterized protein. (578 aa)    
Predicted Functional Partners:
TCAP_01415
RanBD1 domain-containing protein.
    
  0.970
TCAP_01630
Regulator of nonsense transcripts UPF3.
    
 0.925
TCAP_01044
PWI domain-containing protein.
   
 0.925
TCAP_06081
Regulator of nonsense transcripts UPF2.
    
 
 0.891
TCAP_05498
Pre-mRNA-splicing factor CWC21.
   
 0.889
TCAP_02579
Pre-mRNA-splicing factor 38A.
   
 0.843
TCAP_04662
Uncharacterized protein.
   
 0.841
TCAP_04481
Pre-mRNA-splicing factor dre4.
   
 0.841
TCAP_05091
Nuclear cap-binding protein subunit 1.
    
 0.830
TCAP_04317
Splicing factor 3B subunit 1.
   
 
 0.824
Your Current Organism:
Tolypocladium capitatum
NCBI taxonomy Id: 45235
Other names: Clavaria capitata, Cordyceps capitata, Elaphocordyceps capitata, T. capitatum, Tolypocladium capitatum (Holmsk. : Fr.) Quandt, Kepler & Spatafora, 2014, Torrubia capitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.