STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aasi_0005RNA methyltransferase, TrmA family; PROSITE: PS01231, (Uracil-5)-methyltransferase;PS01230, (Uracil-5)-methyltransferase; PROFILE: PS50926, Deoxyribonuclease/rho motif-related TRAM; PFAM: PF05958, (Uracil-5)-methyltransferase;PF01938, Deoxyribonuclease/rho motif-related TRAM; SUPERFAMILY: SSF50249, Nucleic acid-binding, OB-fold-like; TIGRFAMS: TIGR00479, 23S rRNA methyltransferase/RumA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (468 aa)    
Predicted Functional Partners:
pheT
phenylalanyl-tRNA synthetase, beta subunit; PFAM: PF07786, Protein of unknown function DUF1624; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
    0.459
Aasi_0644
Hypothetical protein; PFAM: PF01368, Phosphoesterase, RecJ-like;PF02272, Phosphoesterase, DHHA1.
  
    0.419
Your Current Organism:
Amoebophilus asiaticus
NCBI taxonomy Id: 452471
Other names: C. Amoebophilus asiaticus 5a2, Candidatus Amoebophilus asiaticus 5a2, Candidatus Amoebophilus asiaticus str. 5a2, Candidatus Amoebophilus asiaticus strain 5a2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.