STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_1755PFAM: TonB-dependent receptor plug; KEGG: ana:alr2596 ferrichrome-iron receptor. (1289 aa)    
Predicted Functional Partners:
Oter_1782
TIGRFAM: TonB family protein; KEGG: cps:CPS_4804 TonB domain protein.
  
   0.802
Oter_2978
Hypothetical protein; KEGG: sus:Acid_4050 peptidase-like protein.
  
     0.774
Oter_0456
PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cyb:CYB_0470 methyltransferase, FkbM family.
  
     0.763
Oter_0435
PFAM: response regulator receiver; KEGG: amr:AM1_A0368 response regulator receiver, CheY-like protein.
  
     0.760
Oter_3823
PFAM: Carbohydrate-binding CenC domain protein; Immunoglobulin I-set domain protein; Immunoglobulin domain protein; SMART: Immunoglobulin C2 type; KEGG: ppf:Pput_2585 hypothetical protein.
  
     0.748
Oter_3831
PFAM: response regulator receiver; Metal-dependent hydrolase HDOD; KEGG: gme:Gmet_3268 metal dependent phosphohydrolase.
  
     0.748
Oter_0458
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gvi:glr4308 hypothetical protein.
  
     0.742
Oter_0436
KEGG: ppd:Ppro_3420 hypothetical protein.
  
     0.700
Oter_0194
PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_6328 major facilitator superfamily MFS_1.
  
     0.694
Oter_4311
PFAM: regulatory protein LacI; KEGG: tte:TTE0797 transcriptional regulator.
  
     0.693
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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