STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_1920PFAM: TonB-dependent receptor plug; KEGG: ilo:IL1163 outer membrane protein. (800 aa)    
Predicted Functional Partners:
Oter_2131
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ana:alr2588 ferrichrome-iron receptor.
  
    0.769
Oter_3505
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ana:alr2175 ferrichrome iron receptor.
  
    0.747
Oter_0522
PFAM: TonB-dependent receptor; KEGG: pau:PA14_63960 putative uter membrane protein precursor.
  
    0.746
Oter_1125
PFAM: TonB-dependent receptor plug; KEGG: ajs:Ajs_1523 TonB-dependent siderophore receptor.
  
     0.741
Oter_1352
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ana:alr2626 ferrichrome-iron receptor.
  
    0.741
Oter_3723
PFAM: TonB-dependent receptor plug; KEGG: gvi:gll0319 ferrichrome-iron receptor.
  
     0.734
Oter_2048
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gvi:gll3974 ferrichrome-iron receptor.
  
     0.732
Oter_3722
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: amr:AM1_3398 TonB-dependent siderophore receptor protein.
  
     0.731
Oter_1973
MCP methyltransferase, CheR-type; TIGRFAM: amino acid adenylation domain protein; PFAM: MCP methyltransferase CheR-type; AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; KEGG: ckl:CKL_2354 predicted nonribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.688
Oter_3493
PFAM: TonB-dependent receptor; KEGG: pha:PSHAa1242 hypothetical protein.
  
  
 0.662
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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