STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_2812KEGG: sru:SRU_1809 hypothetical protein. (426 aa)    
Predicted Functional Partners:
Oter_3845
PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: sat:SYN_01607 organic solvent tolerance protein.
  
     0.647
Oter_3075
KEGG: rba:RB2051 conserved hypothetical protein-putative mucin-like protein.
  
     0.593
Oter_0103
PFAM: DNA gyrase/topoisomerase IV subunit A; KEGG: gfo:GFO_1481 topoisomerase IV subunit A.
  
     0.558
Oter_0842
KEGG: sus:Acid_4177 hypothetical protein.
  
     0.539
Oter_0090
KEGG: cyb:CYB_1660 lipoprotein, putative.
  
     0.534
nusA
NusA antitermination factor; Participates in both transcription termination and antitermination.
       0.510
Oter_2811
PFAM: band 7 protein; KEGG: dsy:DSY4504 hypothetical protein.
       0.495
Oter_0495
PFAM: GH3 auxin-responsive promoter; KEGG: gfo:GFO_0242 conserved hypothetical protein, auxin-inducible GH3 family.
  
     0.488
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
 
     0.483
Oter_3602
PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pcu:pc0390 hypothetical protein.
  
     0.481
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.