STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3118KEGG: hau:Haur_1170 carbohydrate-binding CenC domain protein. (818 aa)    
Predicted Functional Partners:
Oter_1067
KEGG: ade:Adeh_3809 hypothetical protein.
  
     0.593
Oter_4164
KEGG: scl:sce5972 hypothetical protein.
  
     0.585
Oter_1017
KEGG: cpy:Cphy_1882 parallel beta-helix repeat.
  
     0.574
Oter_3903
PFAM: glycoside hydrolase family 43; KEGG: dge:Dgeo_2722 glycoside hydrolase, family 43; Belongs to the glycosyl hydrolase 43 family.
 
     0.503
Oter_4163
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rrs:RoseRS_1458 xylose isomerase domain protein TIM barrel.
  
     0.472
Oter_1490
KEGG: reu:Reut_B4205 hypothetical protein.
  
     0.461
Oter_1542
PFAM: protein of unknown function DUF6 transmembrane; KEGG: pde:Pden_0925 protein of unknown function DUF6, transmembrane.
  
     0.460
Oter_1159
PFAM: glycosyl hydrolase 53 domain protein; KEGG: bch:Bcen2424_3290 arabinogalactan endo-1,4-beta-galactosidase.
  
    0.459
Oter_3623
PFAM: glycoside hydrolase family 1; KEGG: bad:BAD_0156 hypothetical protein; Belongs to the glycosyl hydrolase 1 family.
 
     0.453
Oter_0138
KEGG: csc:Csac_2528 hypothetical protein.
  
     0.444
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.