STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3202RbsD or FucU transport; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. (129 aa)    
Predicted Functional Partners:
Oter_3321
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rba:RB10181 ribose transport ATP-binding protein RbsA.
 
  
 0.986
Oter_3322
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: scl:sce3324 transport system permease protein.
 
  
 0.971
Oter_0165
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ctc:CTC00907 D-ribose-binding periplasmic protein.
 
  
 0.945
Oter_3333
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ctc:CTC00907 D-ribose-binding periplasmic protein.
 
  
 0.943
Oter_3320
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: scl:sce3322 put. D-ribose-binding periplasmic protein.
 
  
 0.941
Oter_0048
KEGG: scl:sce3322 put. D-ribose-binding periplasmic protein.
 
  
 0.937
Oter_3227
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: aav:Aave_2255 periplasmic binding protein/LacI transcriptional regulator.
 
  
 0.930
Oter_0055
PFAM: PfkB domain protein; KEGG: dol:Dole_2854 PfkB domain protein.
  
  
 0.698
Oter_0547
PFAM: PfkB domain protein; KEGG: aau:AAur_pTC20246 fructokinase.
  
  
 0.698
Oter_2311
PFAM: PfkB domain protein; KEGG: gsu:GSU0692 carbohydrate kinase, PfkB family.
  
  
 0.698
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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