STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3246PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fps:FP1269 probable ABC-type polysaccharide/polyol phosphate transport system, ATPase component. (435 aa)    
Predicted Functional Partners:
Oter_3245
PFAM: ABC-2 type transporter; KEGG: sat:SYN_02655 ABC-type polysaccharide/polyol phosphate export systems, permease component.
 
 0.998
Oter_2771
PFAM: ABC-2 type transporter; KEGG: syn:slr0977 putative O-antigen export system permease protein, ABC-2 type transporter permease protein.
 
 0.995
Oter_3946
PFAM: ABC-2 type transporter; KEGG: rrs:RoseRS_4096 ABC-2 type transporter.
 
 0.995
Oter_3964
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfo:Pfl_4048 ABC transporter-like.
  
  
 
0.921
Oter_2770
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cau:Caur_2107 ABC transporter related.
  
  
 
0.908
Oter_3973
PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: bch:Bcen2424_0878 glycosyl transferase, family 2.
 
 
 0.775
Oter_3242
PFAM: polysaccharide export protein; KEGG: pol:Bpro_1877 polysaccharide export protein.
  
  
 0.726
Oter_3243
TIGRFAM: capsular exopolysaccharide family; KEGG: dol:Dole_1657 non-specific protein-tyrosine kinase.
     
 0.668
Oter_3244
PFAM: O-antigen polymerase; KEGG: pla:Plav_1908 O-antigen polymerase.
  
  
 0.657
Oter_3527
KEGG: gsu:GSU0124 competence protein F, putative.
   
    0.600
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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