STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3336KEGG: sen:SACE_2137 hypothetical protein. (396 aa)    
Predicted Functional Partners:
Oter_3063
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: rca:Rcas_1874 alpha-L-rhamnosidase.
  
     0.634
Oter_2903
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: sus:Acid_3742 alpha-L-rhamnosidase.
 
     0.609
Oter_2045
Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: sma:SAV1752 glycosyl hydrolase.
 
   
 0.603
Oter_3337
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: drm:Dred_1548 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
       0.572
Oter_3716
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: sus:Acid_3742 alpha-L-rhamnosidase.
 
     0.533
Oter_3064
KEGG: rrs:RoseRS_1804 hypothetical protein.
  
     0.470
Oter_1696
PFAM: protein of unknown function DUF1680; KEGG: sus:Acid_3381 protein of unknown function DUF1680.
  
     0.450
Oter_3335
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: dol:Dole_1696 histidine kinase.
       0.442
Oter_3338
PFAM: DGPFAETKE family protein; KEGG: fjo:Fjoh_0273 DGPFAETKE family protein.
       0.436
Oter_2972
Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: sus:Acid_7109 alpha-L-fucosidase.
 
   
 0.433
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.