STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3504anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: ccr:CC_2708 transcriptional regulator, putative. (348 aa)    
Predicted Functional Partners:
Oter_3503
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: xac:XAC2191 two-component system regulatory protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.956
Oter_0654
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: rru:Rru_A1439 putative FecR.
  
  
 
0.925
Oter_3721
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: ccr:CC_2708 transcriptional regulator, putative.
  
  
 
0.914
Oter_3505
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ana:alr2175 ferrichrome iron receptor.
 
 
 0.839
Oter_0655
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bbr:BB4120 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.810
Oter_3720
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: xac:XAC2191 two-component system regulatory protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.803
Oter_0866
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mmr:Mmar10_2735 TonB-dependent receptor.
 
  
 0.733
Oter_1543
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pde:Pden_4173 TonB-dependent receptor.
 
 
 0.728
Oter_0522
PFAM: TonB-dependent receptor; KEGG: pau:PA14_63960 putative uter membrane protein precursor.
 
 
 0.723
Oter_2131
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ana:alr2588 ferrichrome-iron receptor.
 
 
 0.706
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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