node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Oter_2376 | rsmA | Oter_2376 | Oter_3555 | PFAM: NUDIX hydrolase; KEGG: pca:Pcar_1499 Mut/NUDIX family protein, putative isopentenyl-diphosphate isomerase. | Ribosomal RNA adenine methylase transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.901 |
rpsB | rpsD | Oter_4501 | Oter_0202 | PFAM: ribosomal protein S2; KEGG: rha:RHA1_ro06578 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
rpsB | rpsE | Oter_4501 | Oter_0209 | PFAM: ribosomal protein S2; KEGG: rha:RHA1_ro06578 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.998 |
rpsB | rpsG | Oter_4501 | Oter_0229 | PFAM: ribosomal protein S2; KEGG: rha:RHA1_ro06578 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
rpsB | rpsI | Oter_4501 | Oter_0696 | PFAM: ribosomal protein S2; KEGG: rha:RHA1_ro06578 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | PFAM: ribosomal protein S9; KEGG: mxa:MXAN_1994 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.998 |
rpsB | rpsJ | Oter_4501 | Oter_0227 | PFAM: ribosomal protein S2; KEGG: rha:RHA1_ro06578 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.998 |
rpsB | rpsL | Oter_4501 | Oter_0230 | PFAM: ribosomal protein S2; KEGG: rha:RHA1_ro06578 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.999 |
rpsB | rpsO | Oter_4501 | Oter_2416 | PFAM: ribosomal protein S2; KEGG: rha:RHA1_ro06578 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.998 |
rpsB | rpsQ | Oter_4501 | Oter_0217 | PFAM: ribosomal protein S2; KEGG: rha:RHA1_ro06578 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.998 |
rpsB | rsmA | Oter_4501 | Oter_3555 | PFAM: ribosomal protein S2; KEGG: rha:RHA1_ro06578 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Ribosomal RNA adenine methylase transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.866 |
rpsD | rpsB | Oter_0202 | Oter_4501 | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | PFAM: ribosomal protein S2; KEGG: rha:RHA1_ro06578 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
rpsD | rpsE | Oter_0202 | Oter_0209 | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
rpsD | rpsG | Oter_0202 | Oter_0229 | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
rpsD | rpsI | Oter_0202 | Oter_0696 | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | PFAM: ribosomal protein S9; KEGG: mxa:MXAN_1994 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.997 |
rpsD | rpsJ | Oter_0202 | Oter_0227 | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
rpsD | rpsL | Oter_0202 | Oter_0230 | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.999 |
rpsD | rpsO | Oter_0202 | Oter_2416 | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.998 |
rpsD | rpsQ | Oter_0202 | Oter_0217 | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.999 |
rpsD | rsmA | Oter_0202 | Oter_3555 | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | Ribosomal RNA adenine methylase transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.892 |
rpsE | rpsB | Oter_0209 | Oter_4501 | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | PFAM: ribosomal protein S2; KEGG: rha:RHA1_ro06578 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.998 |