STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3679PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: ade:Adeh_4163 methyl-viologen-reducing hydrogenase, delta subunit. (334 aa)    
Predicted Functional Partners:
Oter_3677
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mka:MK0265 heterodisulfide reductase, subunit A, polyferredoxin.
 
 0.999
Oter_3678
PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: mmp:MMP0821 coenzyme F420-non-reducing hydrogenase subunit delta.
 0.999
Oter_3680
PFAM: nickel-dependent hydrogenase large subunit; KEGG: afw:Anae109_4306 nickel-dependent hydrogenase large subunit.
 
 0.999
Oter_3676
CoB--CoM heterodisulfide reductase; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: drm:Dred_0634 CoB--CoM heterodisulfide reductase.
 
 0.995
Oter_1545
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: csc:Csac_1863 NADH dehydrogenase (quinone).
   
 
 0.965
Oter_3675
KEGG: mtp:Mthe_1574 putative heterodisulfide reductase, C subunit.
 
   
 0.946
Oter_3681
TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: ade:Adeh_4161 peptidase M52, hydrogen uptake protein.
 
  
 0.924
Oter_1544
TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein; KEGG: mta:Moth_1717 iron hydrogenase, small subunit.
   
 
 0.792
Oter_1740
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: scl:sce8491 nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 
 0.770
Oter_3887
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
    
   0.699
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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