STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hlyD-2HlyD-family secretion protein; Type I secrection membrane fusion protein. (463 aa)    
Predicted Functional Partners:
hlyB
Hemolysin secretion protein HlyB; ATP-binding cassette, subfamily B, bacterial / ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
 
 0.969
BAI95533.1
Putative type I secretion protein ATP-binding protein; ABC-type bacteriocin/lantibiotic exporter, contain an N-terminal double-glycine peptidase domain.
 
 0.872
BAI97064.1
Putative type I secretion protein ATP-binding protein; ABC-type bacteriocin/lantibiotic exporter, contains an N-terminal double-glycine peptidase domain.
 
 0.872
BAI97065.1
Putative agglutination protein; Outer membrane protein.
 
 
 0.832
BAI95534.1
RND-family efflux transporter; Outer membrane protein.
 
 
 0.786
BAI98014.1
Putative Ca2+-binding hemolysin; RTX toxin or related Ca2+-binding protein.
 
  
 0.783
BAI96953.1
Remnant; type I secretion membrane fusion protein.
  
     0.774
BAI95442.1
RTX toxin or related Ca2+-binding protein / possible secreted protease.
 
  
 0.761
hlyC
Hemolysin-activating lysine-acyltransferase HlyC; Cytolysin-activating lysine-acyltransferase / ACP:hemolysin acyltransferase (hemolysin-activating protein).
 
   
 0.748
BAI98322.1
ABC-type protease/lipase transport system, ATPase and permease components.
  
 0.742
Your Current Organism:
Sphingobium japonicum
NCBI taxonomy Id: 452662
Other names: S. japonicum UT26S, Sphingobium japonicum UT26, Sphingobium japonicum UT26S, Sphingobium japonicum str. UT26S, Sphingobium japonicum strain UT26S
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.