STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Achl_3384KEGG: aau:AAur_0636 BNR/Asp-box repeat-containing protein; TIGRFAM: conserved repeat domain protein; PFAM: glycosyl hydrolase BNR repeat-containing protein. (978 aa)    
Predicted Functional Partners:
Achl_3385
Exo-alpha-sialidase; KEGG: art:Arth_0189 exo-alpha-sialidase.
 
  
 
0.959
Achl_0056
KEGG: kra:Krad_3464 putative alpha-galactosidase.
     
  0.900
Achl_1749
PFAM: glycoside hydrolase clan GH-D; KEGG: art:Arth_3388 glycoside hydrolase, clan GH-D.
     
  0.900
Achl_3512
KEGG: art:Arth_3791 hypothetical protein.
  
     0.728
Achl_3751
KEGG: art:Arth_3966 hypothetical protein.
  
     0.717
Achl_2691
KEGG: art:Arth_2978 hypothetical protein.
 
  
 0.680
Achl_3391
PFAM: dihydrodipicolinate synthetase; KEGG: art:Arth_0184 dihydrodipicolinate synthase; Belongs to the DapA family.
 
   
 0.679
Achl_2275
PFAM: protein of unknown function DUF214; KEGG: art:Arth_2535 protein of unknown function DUF214.
 
     0.676
Achl_1177
PFAM: protein of unknown function DUF214; KEGG: art:Arth_1101 protein of unknown function DUF214.
 
  
 0.661
Achl_3389
ABC transporter related; PFAM: binding-protein-dependent transport systems inner membrane component; ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: art:Arth_0186 ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
 
     0.657
Your Current Organism:
Pseudarthrobacter chlorophenolicus
NCBI taxonomy Id: 452863
Other names: Arthrobacter chlorophenolicus A6, P. chlorophenolicus A6, Pseudarthrobacter chlorophenolicus A6
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