STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OsJ_0336350S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (122 aa)    
Predicted Functional Partners:
OsJ_22158
50S ribosomal protein L35 ; Belongs to the bacterial ribosomal protein bL35 family
  
 0.994
SDH2-1
Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q)
  
 0.994
OS04T0321500-00
OSJNBa0041M06.7 protein; OSJNBb0062H02.1 protein
  
 0.993
mtRPL27a
Mitochondrial ribosomal protein L27; Os08g0404250 protein; Os08g0404300 protein; Putative 50S ribosomal protein L27; cDNA clone:001-110-H03, full insert sequence
  
 0.993
OS08T0404300-01
cDNA clone:001-110-H03, full insert sequence; Mitochondrial ribosomal protein L27; Os08g0404250 protein; Os08g0404300 protein; Putative 50S ribosomal protein L27; cDNA clone:001-110-H03, full insert sequence
  
 0.993
OS11T0269100-00
Os11g0269100 protein; Belongs to the universal ribosomal protein uL16 family
   
 0.993
OsJ_06142
Os02g0259600 protein; Putative 50S ribosomal protein L21, chloroplast; cDNA clone:006-201-D06, full insert sequence; cDNA clone:J013000I04, full insert sequence
   
 0.992
OS03T0249200-01
Immature colon carcinoma transcript 1 protein, putative, expressed; Os03g0249200 protein; cDNA clone:J023035H14, full insert sequence
  
 0.992
OsJ_13074
Ribosomal protein ; Belongs to the bacterial ribosomal protein bL36 family
   
 0.992
OsJ_19509
cDNA clone:J013153H24, full insert sequence; Os05g0557800 protein; Putative 50S ribosomal protein L21; Putative ribosomal protein L21; cDNA clone:J013153H24, full insert sequence
   
 0.992
Your Current Organism:
Oryza sativa
NCBI taxonomy Id: 4530
Other names: O. sativa, Oryza sativa L., red rice, rice
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