STRINGSTRING
PCF7 protein (Oryza sativa) - STRING interaction network
"PCF7" - Transcription factor PCF7 in Oryza sativa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCF7Transcription factor PCF7; Transcription activator. Binds the promoter core sequence 5’-GGNCC-3’ (446 aa)    
Predicted Functional Partners:
OS03T0197900-01
Os03g0197900 protein; Uncharacterized plant-specific domain TIGR01568 family protein, expressed; cDNA clone-002-175-F02, full insert sequence (275 aa)
       
 
  0.628
OsJ_15705
cDNA clone-J033035C24, full insert sequence; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (545 aa)
           
  0.620
OsJ_02586
Os01g0612600 protein; Uncharacterized protein (326 aa)
           
  0.616
OS05T0515700-01
Os05g0515700 protein (641 aa)
           
  0.599
OS01T0753000-01
Os01g0753000 protein; Putative vascular plant one zinc finger protein (534 aa)
           
  0.599
P0425F05.5
Os06g0226700 protein; Putative auxin-induced basic helix-loop-helix transcription; cDNA clone-002-105-B01, full insert sequence (387 aa)
       
 
  0.584
OS07T0586500-02
Os07g0586500 protein; cDNA clone-J013164A10, full insert sequence (406 aa)
           
  0.566
OS01T0732300-01
cDNA clone-002-142-F05, full insert sequence; Os01g0732300 protein; Putative uncharacterized protein OSJNBb0036G09.7; cDNA clone-002-142-F05, full insert sequence (323 aa)
       
 
  0.563
OsJ_02670
cDNA clone-001-117-G11, full insert sequence; Os01g0625900 protein; Putative uncharacterized protein P0006C01.17; Uncharacterized protein; cDNA clone-001-117-G11, full insert sequence (366 aa)
       
 
  0.563
OsJ_01901
cDNA clone-J033149O18, full insert sequence; Os01g0390900 protein; Putative DsPTP1 protein; Uncharacterized protein; cDNA clone-J033149O18, full insert sequence (199 aa)
           
  0.557
Your Current Organism:
Oryza sativa
NCBI taxonomy Id: 4530
Other names: O. sativa, Oryza sativa, Oryza sativa L., red rice, rice
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