STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPT1Coleoptile phototropism protein 1; May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Plays a role as signal transduction component in coleoptile phototropism and lateral translocation of auxin (762 aa)    
Predicted Functional Partners:
OS10T0406900-00
Expressed protein; Putative uncharacterized protein OSJNBa0060A14.16
   
 
 0.874
PHOT2
Phototropin-2; Protein kinase that acts as a blue light photoreceptor in a signal-transduction pathway for phototropic responses. Regulates a wide range of physiological activities in plants that maximize the efficiency of photosynthesis, such as chloroplast relocations, stomata opening, and leaf expansion (By similarity)
   
 
 0.856
PHOT1B
Phototropin-1B; Protein kinase that acts as a blue light photoreceptor in a signal-transduction pathway for phototropic responses. Regulates a wide range of physiological activities in plants that maximize the efficiency of photosynthesis, such as chloroplast relocations, stomata opening, and leaf expansion (By similarity)
   
 
 0.856
OS12T0101800-02
Nonphototropic hypocotyl protein 1, putative, expressed; cDNA clone:J013081N02, full insert sequence
   
 
 0.856
RGB1
Guanine nucleotide-binding protein subunit beta; Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein- effector interaction
    
   0.808
OsJ_08372
Os02g0746000 protein; Putative cullin 3; cDNA clone:J023079J03, full insert sequence ; Belongs to the cullin family
    
 
 0.544
OsJ_16378
OSJNBa0033G05.2 protein; OSJNBa0063C18.16 protein; Os04g0643000 protein ; Belongs to the cullin family
    
 
 0.544
OsJ_26204
Os08g0170900 protein; Putative cullin 3B ; Belongs to the cullin family
    
 
 0.544
P0499C11.8
Os01g0264600 protein; Putative uncharacterized protein P0453A06.26; Putative uncharacterized protein P0499C11.8
   
 
 0.529
OsCRY2
cDNA clone:J013042O16, full insert sequence; Putative cryptochrome 2
      
 0.507
Your Current Organism:
Oryza sativa
NCBI taxonomy Id: 4530
Other names: O. sativa, Oryza sativa, Oryza sativa L., red rice, rice
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