STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NCED19-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic; Has a 11,12(11',12') 9-cis epoxycarotenoid cleavage activity. Catalyzes the first step of abscisic-acid biosynthesis from carotenoids (638 aa)    
Predicted Functional Partners:
OsJ_13064
Sex determination protein tasselseed 2, putative, expressed; Os03g0810800 protein; Putative alcohol dehydrogenase; Putative short chain alcohol dehydrogenase; Sex determination protein tasselseed 2, putative, expressed; cDNA clone:J023042C15, full insert sequence
     
 0.989
NCED3
9-cis-epoxycarotenoid dioxygenase 3; Os03g0645900 protein; Viviparous-14, putative, expressed; Has a 11,12(11',12') 9-cis epoxycarotenoid cleavage activity. Catalyzes the first step of abscisic-acid biosynthesis from carotenoids
  
  
0.872
NCED5
9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic; Has a 11,12(11',12') 9-cis epoxycarotenoid cleavage activity. Catalyzes the first step of abscisic-acid biosynthesis from carotenoids
  
  
0.868
NCED4
9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic; Has a 11,12(11',12') 9-cis epoxycarotenoid cleavage activity. Catalyzes the first step of abscisic-acid biosynthesis from carotenoids
  
  
0.867
OsJ_03346
cDNA clone:J013160L20, full insert sequence; Os01g0730500 protein; Putative uncharacterized protein P0435H01.26; Uncharacterized protein; cDNA clone:J013160L20, full insert sequence
   
    0.799
OS07T0204900-01
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
   
  
 0.784
ARD2
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2; Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene); Belongs to the acireductone dioxygenase (ARD) family
      
 0.768
ZEP
Zeaxanthin epoxidase, chloroplastic; Zeaxanthin epoxidase that plays an important role in the xanthophyll cycle and abscisic acid (ABA) biosynthesis. Converts zeaxanthin into antheraxanthin and subsequently violaxanthin. Required for resistance to osmotic and drought stresses, seed development and dormancy
   
  
 0.765
PSY1
cDNA clone:J023057D05, full insert sequence; Phytoene synthase-like
   
 
 0.752
PSY2
Phytoene synthase, chloroplast, putative, expressed; Os12g0626400 protein
   
 
 0.736
Your Current Organism:
Oryza sativa
NCBI taxonomy Id: 4530
Other names: O. sativa, Oryza sativa L., red rice, rice
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