STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OsJ_08135Ribose-phosphate pyrophosphokinase 4 ; Belongs to the ribose-phosphate pyrophosphokinase family (325 aa)    
Predicted Functional Partners:
OsJ_20876
Os06g0258900 protein; Putative fructose/tagatose bisphosphate aldolase; cDNA clone:J013116E07, full insert sequence
  
 0.921
OS04T0539701-00
annotation not available
      
 0.843
OS03T0603100-00
Os03g0603100 protein; Cytochrome P450 78A4, putative, expressed; Putative cytochrome P-450
      
 0.841
UMPS1
Uridine 5'-monophosphate synthase Orotate phosphoribosyltransferase Orotidine 5'-phosphate decarboxylase; In the N-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family
   
 
 0.819
UMPS2
Uridine 5'-monophosphate synthase Orotate phosphoribosyltransferase Orotidine 5'-phosphate decarboxylase; In the N-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family
   
 
 0.819
OS03T0134300-01
ATP phosphoribosyltransferase, chloroplastic; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP); Belongs to the ATP phosphoribosyltransferase family. Long subfamily
  
 
 0.798
OS06T0571400-01
Elongation factor 1-gamma 3; Probably plays a role in anchoring the complex to other cellular components
   
    0.792
OS02T0768100-01
Os02g0768100 protein
      
 0.781
OS04T0166500-01
annotation not available
      
 0.781
OS08T0162300-01
annotation not available
      
 0.781
Your Current Organism:
Oryza sativa
NCBI taxonomy Id: 4530
Other names: O. sativa, Oryza sativa L., red rice, rice
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