STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MADS22MADS-box transcription factor 22; Probable transcription factor. May be required for spikelet (rice flower) development (228 aa)    
Predicted Functional Partners:
EXPA2
Expansin-A2; May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity)
      
 0.852
GI
Protein GIGANTEA; Involved in regulation of circadian rhythm, and in the control of the photoperiodic flowering. Acts as suppressor of flowering under short-day (SD) and long-day (LD) conditions. Activates Hd1/CONSTANS gene; Belongs to the GIGANTEA family
    
 
 0.850
EXPA7
Expansin-A7; May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity)
      
 0.833
LHP1
Probable chromo domain-containing protein LHP1; Structural component of heterochromatin involved in gene repression. Recognizes and binds histone H3 tails methylated at 'Lys-9', leading to epigenetic repression (By similarity)
    
 
 0.811
FL
Probable transcription factor FL; Probable transcription factor
    
 
 0.771
OsJ_13392
Putative flowering-time related protein (FRI-like); cDNA, clone: J075091A15, full insert sequence ; Belongs to the Frigida family
      
 0.686
APO1
Panicle organization related protein; Putative stamina pistilloidia
    
 
 0.676
WUS
WUSCHEL-related homeobox 1A; Transcription factor which may be involved in developmental processes
      
 0.656
OsJ_15268
OJ991113_30.17 protein; Os04g0488400 protein; cDNA clone:J013159E08, full insert sequence
    
 
 0.634
OS09T0513500-00
annotation not available
    
 
 0.634
Your Current Organism:
Oryza sativa
NCBI taxonomy Id: 4530
Other names: O. sativa, Oryza sativa, Oryza sativa L., red rice, rice
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