STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALD1Aminotransferase ALD1 homolog; Probable aminotransferase that may generate amino-acid- derived defense signals and be involved in resistance to pathogens (121 aa)    
Predicted Functional Partners:
DAPB1
Probable 4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic; Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family
     
 0.915
DAPB2
Probable 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic; Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate
     
 0.915
OS12T0623800-01
Os12g0623700 protein
      
 0.822
AGD2
Probable LL-diaminopimelate aminotransferase, chloroplastic; Required for lysine biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli (By similarity); Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. LL-diaminopimelate aminotransferase subfamily
  
  
0.817
OS03T0182000-00
annotation not available
   
  
 0.781
MST4
Sugar transport protein MST4; Mediates active uptake of hexoses by sugar:proton symport (Probable). Can transport glucose, fructose, mannose and galactose. Can transport xylose and ribose
   
 
 0.768
OsJ_12918
Expressed protein; Os11g0150400 protein; cDNA clone:001-011-H08, full insert sequence; cDNA clone:J023101N09, full insert sequence
      
 0.753
OS05T0513900-01
Os05g0513900 protein
      
 0.743
OS09T0361500-01
annotation not available
  
 
 0.714
OS03T0299600-01
Os03g0299600 protein
      
 0.691
Your Current Organism:
Oryza sativa
NCBI taxonomy Id: 4530
Other names: O. sativa, Oryza sativa, Oryza sativa L., red rice, rice
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