STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
4CLL34-coumarate--CoA ligase-like 3 (591 aa)    
Predicted Functional Partners:
OS09T0127300-01
Os09g0127300 protein; Putative cinnamoyl-CoA reductase; cDNA clone:J023051O20, full insert sequence
  
 
 0.990
PAL
Phenylalanine ammonia-lyase; This is a key enzyme of plant metabolism catalyzing the first reaction in the biosynthesis from L-phenylalanine of a wide variety of natural products based on the phenylpropane skeleton
  
 
 0.987
P0710A02.8
Os01g0591300 protein; Putative cytosolic aldehyde dehydrogenase RF2D
  
 0.986
OS02T0180700-01
Os02g0180700 protein; Putative cinnamoyl-CoA reductase; cDNA clone:J023064M01, full insert sequence
  
 
 0.984
OsJ_07593
Phenylalanine ammonia-lyase
  
 
 0.983
COA1
Caffeoyl-CoA O-methyltransferase; Os06g0165800 protein; Putative caffeoyl-CoA O-methyltransferase
    
 0.980
OS01T0688200-01
Os01g0688200 protein
    
 0.979
OS01T0820000-00
annotation not available
   
 
 0.979
OS02T0207900-01
Os02g0207900 protein
    
 0.979
OsJ_30647
Hydrolase, alpha/beta fold family protein, putative, expressed; Os10g0135600 protein; cDNA clone:J013090G24, full insert sequence; cDNA clone:J013091N22, full insert sequence
    
 0.979
Your Current Organism:
Oryza sativa
NCBI taxonomy Id: 4530
Other names: O. sativa, Oryza sativa L., red rice, rice
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