STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKX11Cytokinin dehydrogenase 11; Catalyzes the oxidation of cytokinins, a family of N(6)- substituted adenine derivatives that are plant hormones, where the substituent is an isopentenyl group (101 aa)    
Predicted Functional Partners:
HATB
Probable histone acetyltransferase type B catalytic subunit; Acetylates soluble but not nucleosomal H4
      
 0.758
OsJ_08394
Os02g0750100 protein; ATP synthase
    
 
 0.709
OS04T0506100-01
Os04g0506100 protein
    
 
 0.701
OsJ_04908
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37
      
 0.680
D2HGDH
Probable d-2-hydroxyglutarate dehydrogenase, mitochondrial; Catalyzes the oxidation of D-2-hydroxyglutarate to alpha- ketoglutarate
   
 
 0.653
OS10T0396400-01
Os10g0396400 protein
      
 0.642
OS10T0396666-00
annotation not available
      
 0.642
BGLU4
Beta-glucosidase 4
      
 0.641
OsJ_15384
Glycosyltransferase; OSJNBb0002J11.3 protein; OSJNBb0116K07.18 protein; Os04g0506000 protein; cDNA clone:J013130B16, full insert sequence ; Belongs to the UDP-glycosyltransferase family
      
 0.639
SPL1
Squamosa promoter-binding-like protein 1; Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'
      
 0.636
Your Current Organism:
Oryza sativa
NCBI taxonomy Id: 4530
Other names: O. sativa, Oryza sativa L., red rice, rice
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