STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOX4Homeobox-leucine zipper protein HOX4; Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling (277 aa)    
Predicted Functional Partners:
OsJ_15829
OSJNBa0088I22.17 protein; Os04g0569900 protein; cDNA clone:J023086B08, full insert sequence
      
 0.685
ZHD6
Zinc-finger homeodomain protein 6; Putative transcription factor
    
 
 0.619
HSFA2E
Heat stress transcription factor A-2e; Transcriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response; Belongs to the HSF family. Class A subfamily
      
 0.615
HSFA6A
Putative heat stress transcription factor A-6a; Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE)
      
 0.615
HSF5
Heat stress transcription factor A-2b; Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE); Belongs to the HSF family. Class A subfamily
      
 0.615
HAP5C
Nuclear transcription factor Y subunit C-2; Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A. Component of the NF-Y/HAP transcription factor complex (By similarity); Belongs to the NFYC/HAP5 subunit family
      
 0.613
OsJ_22695
cDNA clone:001-023-H04, full insert sequence; Os06g0724300 protein; Putative uncharacterized protein P0535F09.34; Putative uncharacterized protein P0548E04.1; cDNA clone:001-023-H04, full insert sequence
      
 0.612
OsJ_34870
GRAS family transcription factor containing protein, expressed; GRAS family transcription factor, putative; Os11g0705200 protein ; Belongs to the GRAS family
    
 
 0.564
OS05T0455400-01
Os05g0455400 protein
      
 0.563
OsJ_22327
Os06g0671600 protein; Putative uncharacterized protein OSJNBa0032M14.11; Putative uncharacterized protein P0485A07.21
      
 0.562
Your Current Organism:
Oryza sativa
NCBI taxonomy Id: 4530
Other names: O. sativa, Oryza sativa, Oryza sativa L., red rice, rice
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